Basic Information
VIS ID
TVIS10020195
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1094
End
2190
Orient
+
Integrated sequence
TTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCT
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
178593657/178624522 (Hg38)
End
178594705/178625570 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/1595077; hsa-mir-1182/Downstream/52179;
Nearest TSS
ENST00000473358/Upstream/81726; ENST00000608190/Downstream/26136;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/81301, chr1-CpG: 113/Downstream/99263
Upstream sequence
atttttgacatttgcagtaagtttcataactacattagcattagtaatctaaatgtaatactatttcactagctccatctttcattacatttcctttgat
Downstream sequence
cagtgagccaagatcatgccattgcactccagcctgggcgaaagagctagactcggtctcgaaaaaaaaagaaagaaaaagaaaaaaaaaAAGAAAGAGA
Target sequence
actaaaaatacaaaaaattagccgggcgtggtggcacgcgcctgtaatcctagctactctggaggctgaggcagagaattgcttaaacctggaggggcggaggttgcagtgagccgagatcacgccactgcactccagcctgggcgacacagtgagactccatctcCAAaaaaaaaaagaaaagaaaagaaaagaaaatagtgttggcatttatccattttcaaaaagaaaagtttaacctcaacaaccaaagac
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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