VISDB Viral Integration Site DataBase

VIS ID

TVIS10020203

Fusion event

HBV-ALB integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1

End

1049

Orient

-

Integrated sequence

TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG

Chromosome

chr4

Cytoband

q13.3

Reference genome

Start

End

74284376/73418659 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

Nearest miRNA

hsa-mir-12113/Upstream/7140683; hsa-mir-1243/Downstream/3154909;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/158198, chr4-CpG: 20/Downstream/201668

Upstream sequence

AGTTAGAGAAAAATAGAGGTCTCCCTTTGTTTAGGGTTTGTGCTGAttcctttcctttccttccttccttccctccttccttccttccttccttccttcc

Downstream sequence

GTAAATAATTATTTTAAGTTTGCCCTATGGTGGCCCCACACATGAGACAAACCCCCAAGATGTGACTTTTGAGAATGAGACTTGGATAAAAAACATGTAG

Target sequence

GGGCAGCAAATGTTGTAAACATCCTGAAGCAAAAAGAATGCCCTGTGCAGAAGACTATGTGAGTCtttaaaaaaatataataaattaataatgaaaaaattttaCCTTTAGATATTGATAATGCTAGCTTTCATAAGCAGAAGGAAGTAAtgtgtgtgtgtgcatgtttgtgtgcatgtgtgtgtgcatgcacgtgtgtgtatgtgtgATATTGGCAGTCAAGGCCCCGAGGATGATAAtttttttttttttttt