ST8SIA1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020220
Fusion event
HBV-ST8SIA1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1079
End
2175
Orient
+
Integrated sequence
TAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGA
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
22474706/22321772 (Hg38)
End
22475754/22322820 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST8SIA1
Nearest miRNA
hsa-mir-1244-3/Upstream/4648378; hsa-let-7i/Downstream/1889601;
Nearest TSS
ENST00000382841/Upstream/34578; ENST00000508615/Downstream/11343;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/275117, chr12-CpG: 102/Downstream/11081
Upstream sequence
CTTGCCCAACGTCAGTCATTGCTTGCCTAGTGGCCATTTTCTGTGCTTATTTAACATCTGTTAACTGTTTTAATGTGGAAACATCTCTTTCCCCTTTATT
Downstream sequence
GCTGCAGATTCATGCTGAAGACGTTTAATTTTAGTAAATAGGAAAATGACTCTTAAAATTAGAGTTGTGAAACATAGTATTTCTATTTTATCCAGGACAC
Target sequence
ACCCCAAATTGAGACTCAGCTCACTGCCTACTGACTCAGCTCACCAGAGTCTTGCTGCCGGCCCCTCCACTTCCTCTTCTTTGCTATTGCAGGGTGGCAGGTTGAGTTGAGAACAGTTGCTTACAAAGTGAGCAATCCCCTTCCAAGCCAGCCTGCCTCTGTCTCTTTGATTCTACCAGTAATTGAGCTTTGTGTTTCCCCATGGGCTCATGTATCTTTCAGCAAGGTTTTAAAGTGCTTTTCCTCTCCAGCAGT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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