Basic Information
VIS ID
TVIS10020228
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1179
End
2275
Orient
+
Integrated sequence
GTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCG
Host Sequence
Chromosome
chr4
Reference genome
GRCh37/hg19
Start
191043561
End
191044609
Orient
+
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
ccttgcagttctttaaactgtaatcctttgttattacacatgagttttattgatgtggtagtaaggtgtggggaaagtggaagcattccataatcttcgg
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
atccacggtaaagatccttcctctttgcagccgagaataatGagggttggggttagggttagggttagggtgagggtgagggtgagggtgagggtgagggtgagggttagggttaggggttagggtcagggtcagggtcagggtcagggtcaggggtagggtagggttagggttagggttagggttagggttagggttgggttagggttagggtcagggtcagggtcagggtcagggtcagggtcagggttaggg
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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