Basic Information
VIS ID
TVIS10020231
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1176
End
2272
Orient
+
Integrated sequence
CAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTC
Host Sequence
Chromosome
chrX
Reference genome
GRCh37/hg19
Start
155259771
End
155260819
Orient
+
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
ACAACCATCTATTGGTTCTCATAATTTTTTAAACTCAAATTTTAGATTATTCTCTGGATTGTAACACAAGCTCTTCACTGTTTACAAAGTTATTTATGAA
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
ttagggttagggtagggttagggttagggttaggggttaggggttagggtagggttagggtgagggtgagggtgagggtgagggtgagggtgagggttagggttagggttagggttagggttaggggttaggggttagggttagggttaggggttaggggttagggttagggttaggggttagggttagggttaggggttaggggttaggggttaggggttagggtagggtagggtagggtagggagggttaggg
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate