Basic Information
VIS ID
TVIS10020235
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1170
End
2266
Orient
+
Integrated sequence
CTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTC
Host Sequence
Chromosome
chr1
Reference genome
GRCh37/hg19
Start
249239959
End
249241007
Orient
+
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
tagcattttactatgttcacagattctgagcacgagaaatttagaaaaggcccagcaggatggcttgtctctctttcttatacctggagcctcagccgga
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
gttagggttagggttaggggttaggggttagggttagggttagggttaggggttaggggttaggggttagggttagggttagggttagggttgggttagggttagggttagggttagggttaggggttagggttagggttgggttagggttagggttaggggttagggttaggggttagggttagggttagggttagggttagggttagggtagggttagggttagggttagggttagggttagggttagggtta
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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