SCGB1C1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020241
Fusion event
HBV-SCGB1C1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1166
End
2262
Orient
+
Integrated sequence
AGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTT
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
191325/191325 (Hg38)
End
192373/192373 (Hg38)
Orient
-
Location type
Intronic
Target gene
SCGB1C1
Nearest miRNA
hsa-let-7a-2/Downstream/16963;
Nearest TSS
ENST00000527297/Upstream/51713; ENST00000342878/Downstream/707;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/63548, chr11-CpG: 184/Downstream/14602
Upstream sequence
CTCTATTTTAACCTGACTTTCCTGGAAAGACTACCTCAGAATACACAAGTGCACCTCACTAGCCAAAATAAATCCCCACCCCATGCGcacacatacacac
Downstream sequence
AGCAACCCCAAGCCCTCCTTGCTATCCTGGCTACTGATGGAAGATGTACCTCAAGCCTGTCCCATTCCTCACTTCCTGCTGAGACCTGGCCCCAACATGG
Target sequence
tgggtttggtaatgaattttaacaaatgacacaaaaggtagatatacacaaaagaagtgacagtgtggatttcttaatatttaaagtttatactctggaagagaccttgttaagagaacaaaaagacaagccacatattgaagaaaatatttgcaaaatacacatctgagaaagaatttgtcttcaaaatatataaaaaattattaaaactaaacaataagttaaacagcccaactaaaaatgcacacacatctg
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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