Basic Information
VIS ID
TVIS10020256
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1105
End
2201
Orient
+
Integrated sequence
CTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAAT
Host Sequence
Chromosome
chr12
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
115630205/115192400 (Hg38)
End
115631253/115193448 (Hg38)
Orient
-
Fragile sites / regions
FRA12E ; FRA12C
Nearest miRNA
hsa-let-7i/Upstream/1900792; hsa-mir-1178/Downstream/955112;
Nearest TSS
ENST00000382841/Upstream/115075; ENST00000546696/Downstream/69722;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/455383, chr12-CpG: 44/Downstream/258344
Upstream sequence
GTGGAAATAGCAGGCCAGGGCCAAGAAAGTGGCCCACATGGTTGAGAGACTGGTtacataccaggagatcaagcaaatgagtaaatatattggagctaat
Downstream sequence
taaactttttatttttaGAGAAGTATAAAGTGttaaactaaacgtggcctgaggatgcccctgtatcttcagtaatatactacaacctaatttagtatgt
Target sequence
TTGGTTGAAAGCACTTTGAAAAGCTGTTGCCCCACACCTGTCTGGTCGACCAATAGGAATGCTCCGTCCAGAATGGTGGCTACAATGCCCAATAGGAGAGATTCATACTGAATGACATCAAACTGGCCCAATAGGAAGGGTTTATATTGAATGGTATCAAATCAGTCCAATAGGAGTGCTGCCTATGAAACCGGGAAAGGCAATCCAATCCAGTTCTCCCTTTTAGAATTTGATTACTGAggccagatgcggtgg
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate