VISDB Viral Integration Site DataBase

VIS ID

TVIS10020261

Fusion event

HBV-ADRA1A integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2128

End

3176

Orient

-

Integrated sequence

GAAGACCCAGCATCCAGGGAATTAGTAGTCAGCTATGTCAATGTTAATATGGGCCTAAAAATTAGACAACTATTGTGGTTTCACATTTCCTGCCTTACTTTTGGAAGAGAAACTGTCCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCC

Chromosome

chr8

Cytoband

p21.2

Reference genome

Start

End

26698034/26840517 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

Nearest miRNA

hsa-mir-124-1/Upstream/1493995; hsa-mir-10400/Downstream/208336;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/260200, chr8-CpG: 202/Downstream/23608

Upstream sequence

TTTTACAAATGCTCCCAGCATTGTCTCTGCATTTTGCCTTTTGCAGGAACACCCTGTGGTATTCTTCTTCCAAACTCAAACACATATGCCTTTCCCTTAC

Downstream sequence

GATGACCACAGCAGTGGTTTGTACCAATGCACTTCTTGGGAAGTTTCTTTTTTATCCTGAACTTTAGCGTTCTTTTTTTTTTTTTCTTGCCCTGTGGAAT

Target sequence

TTGACTTCCTAAACTTCAAACTGGAAAACCAGCCTCCTCTGACTGTACCTGTACAATGATTTTGGTCCTTTATTGGGCTTAATTACATGCTAGTCTCCACCTTGAAGTCAGGGTCTGTTCCTGTCTGGCGCCTGGTAGACTCTCAATGTTTCTTGAATAAAGTAAATAAAAGATATTTTGAGATCTTAGTCCACTCTGGGGTGGCTTCCCAGAAGAGAAAAGCTGGGATTTATTTTAAGAAATGGAAGTAATTTG