Basic Information
VIS ID
TVIS10020270
Fusion event
HBV-LINC02265 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1401
End
2497
Orient
+
Integrated sequence
ATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACA
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
40317040/40315023 (Hg38)
End
40318088/40316071 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02265
Nearest miRNA
hsa-mir-12113/Upstream/903049; hsa-mir-1243/Downstream/185969;
Nearest TSS
ENST00000502981/Upstream/49551; ENST00000510551/Downstream/414;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/257759, chr4-CpG: 118/Downstream/121733
Upstream sequence
aggagcttaaatgggctgtaccctgtagcattctgaggacaggcctgaattctgagaaacgaaagtggtaaaagtattgtccagtcctttttaagttggt
Downstream sequence
ttaaaaatcaagtttctgaaaatttcaccagatggagaaatactgacaatatgctaattaaattcactattaatcttgatgtaaaatctgtgttaatctc
Target sequence
AGATATCCTTTTTGGTGTCTGTCCTGTGAGATGAACAATAATTTagtcatgtcacttaacgatgtggacattttgtgagaaatgcattgttaggtgatttcatcatcatgtggacatcataaagtgtacttacgcaaacctaaatggtatagcctttgctcctaggctatcaacttgtacagtatgtgatcttactgaatattgtaggcagttataacacaatggtTACACAGTATATGGGATCACAGTATATGT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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