KCND2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020286
Fusion event
HBV-KCND2 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1192
End
2288
Orient
+
Integrated sequence
CAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATC
Host Sequence
Chromosome
chr7
Cytoband
q31.31
Reference genome
GRCh37/hg19
Start
120298197/120658143 (Hg38)
End
120299245/120659191 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCND2
Nearest miRNA
hsa-mir-10525/Upstream/3637824; hsa-mir-10399/Downstream/6398897;
Nearest TSS
ENST00000635602/Upstream/384475; ENST00000473190/Downstream/81653;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/382712, chr7-CpG: 83/Downstream/197875
Upstream sequence
ctcattggagggtttgaacctggcaaaataaatctgggaatcatgaacatataaattccttatgacatagaaatggtccttaaaaccacaggctacttga
Downstream sequence
GACTTCACAGTTTCCCTCTGGTCCTGCCATGTCTTCACTTGTGCAAAGTTATATAGATGGCACGTCTTTGGATTCTACTTCTAAGATGAATGGATCCCAG
Target sequence
GTGGGTTCCTGATATTTCACACAAGAGGTAATTTTTTTTTCCAGAAAGGAAGGCTTATCAATAGTGATAGTTTtaagctccaagcgagtgagaaattgagtctcccctgttcctgctgtattttcaacatctagaaaaatctctgCATTTGTACTCTTTCATGGATTAGATGAAGACCACCATGCAGAATAAGCCCCAAAACATGAAAACAGATTCGTTATTTCATTGTTTTAATCAAATAAATTTAATTTTGCA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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