Basic Information
VIS ID
TVIS10020288
Fusion event
HBV-LOC101927967 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1322
End
2418
Orient
+
Integrated sequence
TATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCG
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
78186838/77959712 (Hg38)
End
78187886/77960760 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC101927967
Nearest miRNA
hsa-mir-1285-2/Upstream/2868798; hsa-mir-10b/Downstream/1688534;
Nearest TSS
ENST00000437798/Upstream/43778; ENST00000439259/Downstream/127970;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2248699, chr2-CpG: 32/Downstream/1032306
Upstream sequence
AAAAATACCTTGGGAGAACATTGCAAAACAGTATCTGAATAAGTAAAAGCTGGTGTCACCCCAGAGTAGAAGTTTGTACCTGTTCGGTAATTAATGGAAA
Downstream sequence
tatcatgagtcagtatgttccttatttttcactttatatttttggttcttgtctttttactttgagaattcaacttcttaaaaagtgttgtacttaacca
Target sequence
ACAATGATCAATTTATTCTTTttttattgtttattcttttttttttttttggagacagagttttgctcttgttgcccagactggagtgcaatggcactgcaacctccaccttccgggttcaatagattctcctgtctcagtctcacaagtagctaggattacaggtgtgtgcaaccacgcccagctaattcttgtatttttagtagagacggggtttcgccatgttggccaggctgatctcaaactccagacctc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate