ZNF697 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020304
Fusion event
HBV-ZNF697 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1185
End
2281
Orient
+
Integrated sequence
GCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
120183975/119641352 (Hg38)
End
120185023/119642400 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF697
Nearest miRNA
hsa-mir-101-1/Upstream/2546624; hsa-mir-1182/Downstream/26208187;
Nearest TSS
ENST00000473358/Upstream/134034; ENST00000641720/Downstream/5373;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9591, chr1-CpG: 73/Downstream/5354
Upstream sequence
CGTTATATCAGGATCTTCTTaagatggctgaataggaacaactccggtctgcagcaagatcaacgcagaaggcgggtgatttctgctttccaactgaggt
Downstream sequence
ttgtaccaaatgtatcactctggagcaggatgctgagagggggggaggctgtacatgtgtgagggccggaggcagacaggaactctactttctcaatttt
Target sequence
CCTAAAAAAGGAAAAGATGGGGAAAGCTCATATACTAaaaaaaataacaagaaaaagagtcacaggtggggagaaaatgtttgcaaaaaaatatatatgataaaaggctgttaaccaagatatagaaagaactcttaaaacccaattaaaaatgggcaaaagatctgaacagacacctcaccaaagaaaatatgcagatggcaaataggcacatgaaaagatttttaacactgatacggtttggctgcgtcccca
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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