Basic Information
VIS ID
TVIS10020308
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1184
End
2280
Orient
+
Integrated sequence
TGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGC
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
20811890/20606583 (Hg38)
End
20812938/20607633 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10393/Downstream/225162;
Nearest TSS
ENST00000557528/Upstream/64783; ENST00000560839/Downstream/32257;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/23771, chr15-CpG: 76/Downstream/147817
Nearby gene
SPATA31E2P(-9235) ;
Upstream sequence
taaacaaaaataggtcccctacagtccaaaaagatataatctgcttatttaatgtattaaaatcatgcagaaaacatggccaaatataaaatgatgttta
Downstream sequence
aaaataattattcttgctgtgctctttgcaaataatcatgccaagtataataaaattaaagtttatttcacaaacaaaatcggtcctatcaggatttgtt
Target sequence
gttaaacaaaaataggtcccctacagtccaaaaagatataatctgcttatttaatgtattaaaatcatgcagaaaacatggccaaatataaaatgatgtttaactttctttgggttatattcacataaatactttattagcatgtgtttcaaaactgtataagattcttataagtttgatatgccttagcatatgttatcagtaataattataattgatacattaaattattgtgtgccacagaggttaaaaatt
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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