Basic Information
VIS ID
TVIS10020309
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1185
End
2281
Orient
+
Integrated sequence
GCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG
Host Sequence
Chromosome
chr1
Reference genome
GRCh37/hg19
Start
1581963
End
1583011
Orient
+
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
cagggtcaagatgaggttgagatgagtgaggcaacagccttgggcacacaaattaagggaatgctaaaaaagtcagtaatcaagataaatcatggtttaa
Downstream sequence
CAGCTGCATCCTCAGGGCTGGTCACAAGTGGGTGGCGGCTCGAGCTCTCTCCAGTCTCTGCTGCACGTCTTTGGCGAGATCACAGCTGCTCCCAACCACA
Target sequence
cagtgcctgtccttccttcctgaggattcaagttaccgtctggtgtcatttctattcaacttgaaggtcttcctttagtatttcctttaaggcaggtttcgccaacaatgaatcccaccagtctctgcttctcagggaatgttgttcgttccctttcacttgtgtagaacggttttgattcctggctgatggttcttctctctgagcagcttgagtatgccactccactgccttctggcctccattgtttctaag
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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