Basic Information
VIS ID
TVIS10020312
Fusion event
HBV-LINC01780 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1185
End
2281
Orient
+
Integrated sequence
GCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
119869945/119327322 (Hg38)
End
119870993/119328370 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01780
Nearest miRNA
hsa-mir-101-1/Upstream/2232594; hsa-mir-1182/Downstream/26522217;
Nearest TSS
ENST00000473358/Upstream/19; ENST00000457318/Downstream/40409;
Nearest CpG islands
chr1-CpG: 25/Target, None/Upstream, None/Downstream
Upstream sequence
aggggtcaacgtcggggtcaggggttacggttaggggtaggggtagggttagggttagggttagggttagggttagggttagggttagggtagggttagg
Downstream sequence
TTGATGAATTGGAGCTCATCTGTCACTAATTGTTCTGTCTTCAATTAAAGTGCAAGCTTATTCTTGGGCCCGCAATATTTGAAATATGTGCTTGTTACTC
Target sequence
CTAGCTCCCTGCCAGGTGTCCGAGGcccgaccgcgccccgcccccaccgcgcccccctccccgcaccccgcccctcctgctcccgGCTTTCATGTGGATCAAGGCTGGAGGATGACAAGCTCCTGACTGATAGATACATGGAGACTTCGCTGGTGATTTATTGGCTTTCTGCACCTGACGAGAACCACTAGGCCTATCTGAGGAGGGAAATATATGGGCTTTCCTGACTCCAAGTGGCAGCCCCGGGGCGAGCAT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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