VISDB Viral Integration Site DataBase

VIS ID

TVIS10020323

Fusion event

HBV-KCNT2 integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1185

End

2281

Orient

+

Integrated sequence

GCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG

Chromosome

chr1

Cytoband

q31.3

Reference genome

Start

End

196436596/196467466 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-4775 ; hsa-mir-500a-5p

Nearest miRNA

hsa-mir-101-1/Upstream/3329835; hsa-mir-1182/Downstream/114947;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3344324, chr1-CpG: 24/Downstream/141112

Upstream sequence

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Downstream sequence

AATGAAACAATTTACTATGACCTAAATTAATTTAAAAGATGTTTAAAAATGAAACATTTGGAAATTTAATTACAGCTTAATTAATTCCAATAGTATGAGT

Target sequence

AAACATTCATCTAGTTGTGAATACTAAAACGTTATCCAAATATTCCTTTAGGCCAAAACTTTAGTCATAATGTCATTTTAAAACCCATTTAAATGGAAAATAACTTTGCCTCCAAACAAGTATAATTTTCAATGCAGTAAAATTAATAATATTGAGCCCTTACTTTGTTGTGCCAGATAAAATACtatacatacatattatgcatatgtatctgtgtacattttgtatatatgtatgtatatataatttcatttg