Basic Information
VIS ID
TVIS10020326
Fusion event
HBV-LINC01470 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1185
End
2281
Orient
+
Integrated sequence
GCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
152248428/152868868 (Hg38)
End
152249476/152869916 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01470
Nearest miRNA
hsa-mir-10397/Upstream/1346720; hsa-mir-103a-1/Downstream/1477190;
Nearest TSS
ENST00000502646/Upstream/179339; ENST00000520353/Downstream/101867;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/943605, chr5-CpG: 50/Downstream/1168707
Upstream sequence
ACTCACCCTACACGTGACAGGGACACCCGGGGACCGCGCCTCACTCACCCTGCACGTGACAGGGACACCCGGGGACAGCGCCTCACTCACCCTGCACGGG
Downstream sequence
tatgtatattggaagcatatgtggataatgacataaggcagaaatcattagctgcttgcaaagttctgccagtgagtgcaatgatattagctattgtttc
Target sequence
atggccaacatggtgaaaccccatctctactaaaaaactacaaaattagctggggcatgatggtgcatgcctgtaatcccagctacttgggaggctgaggcagaagaatcgcttgaaccccagaggcacaggtgagtcgaggttgtgccactgcactccagcctgggcgataagagtgagaccccatctcaaaaaaagaaaaaaaaaaaaggagctttatcaaaagattttccccaagagtcaagatcaaattac
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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