LRRIQ1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020328
Fusion event
HBV-LRRIQ1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1195
End
2291
Orient
+
Integrated sequence
CCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCG
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
85558399/85164621 (Hg38)
End
85559447/85165669 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LRRIQ1
Nearest miRNA
hsa-let-7i/Upstream/4006160; hsa-mir-1178/Downstream/1579399;
Nearest TSS
ENST00000382841/Upstream/3990; ENST00000602731/Downstream/97875;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/251571, chr12-CpG: 56/Downstream/114431
Upstream sequence
ttcagggtattacgttaatcacatgaaagagctggttgacacaacctctaaagttccatcctgccctaatatttctatCTTAAGTAGATGATAACTTCTG
Downstream sequence
tcaccgtgttgcccaggttggtctcctgagctcaggcaatccacccgccttggcctcccaaagtgctaggattacaggcatgagccaccgcgcccggctg
Target sequence
acgttctctgattcagtgctttcagaaactttgagaaaggtattatgactgtcaacattttacagatgataaaacagtagtattgagagattgataggtgacttgaccaaggtttctacatagaaaacaagtggctgaAGGGAAATGGTAATAATTTCTTTGACAAATAAAGCTTGCAAAATCAAAACAAAATACAAATGTTAGAGAAAAAAGATTACCAGGTAACCATGAAATTTATACCACTTAGAATTAAAA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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