ANKS1B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020336
Fusion event
HBV-ANKS1B integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1195
End
2291
Orient
+
Integrated sequence
CCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCG
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
100327731/99933953 (Hg38)
End
100328779/99935001 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKS1B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7i/Upstream/1938505; hsa-mir-1178/Downstream/254883;
Nearest TSS
ENST00000382841/Upstream/108562; ENST00000550886/Downstream/49236;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1038357, chr12-CpG: 85/Downstream/49464
Upstream sequence
caataaatgttgactggggccgctatctggccattcacaaggccggggctaggcacagggaggtggggatcagtgagcaagactgggttcccaccctcag
Downstream sequence
GTTGGAATATTTGAATGTATATACAGTCCTTTCTATTCCGATAAATAAATTAAAAAGCATAAACCATATATAAAATAACTTTTACAAAACAAAGTTAAAC
Target sequence
ttgaattttatcaaatgttttttcagtatcaaatgaaatgatcatatagtttttctcagtatctaatgaaatgatcatatagtttttgtccttcattctgttgatatgatgtatcacagtgattgatctgtgcatgttgaaccatccttacctccctgggataaatcccacttggtcatgataaatgatctttttgatgtgttgttagatttggcttgctagtgttttgttgaggatttctgcatcaatgttcat
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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