GAS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020343
Fusion event
HBV-GAS2 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1426
End
2522
Orient
+
Integrated sequence
ACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAAT
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
22697737/22676191 (Hg38)
End
22698785/22677239 (Hg38)
Orient
+
Location type
Intronic
Target gene
GAS2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-210/Upstream/2916108; hsa-let-7a-2/Downstream/741866;
Nearest TSS
ENST00000527297/Upstream/1418; ENST00000526665/Downstream/78409;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9120, chr11-CpG: 60/Downstream/151980
Upstream sequence
aattattattattttattgtattaattatttattgtattaattatttattgtattgtattattttttaAATCTCtttaaaaaataaaaattattaCATGC
Downstream sequence
ttaaactgagaactgaagattaatagctagccagaccaaacatggggtaagagcctttgcgaggagggaagggcatgtgttgaggtaggaaggagcttgg
Target sequence
CAGTGCTATGGAAGTGTCTCCCCCAGAAGGAAGGGGCTACACCTTTCAGTAATTGATTCATTCAGAGTGCCTTTTATCTCCATCAAGGAAAGGGAGTTATTTAAGCCTAAACAGATGGATTTTTCTCTCTCTTCTGTCTTTTTGGGGTTCACTAATGATTGTCATATTAGTAATTAATTATTAAATTTGAGCTATCAGTTTTCAGATATAGGCAATCACAAGTATGGTagtggaaaataaaagttaagagcacag
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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