Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020344
Fusion event
HBV-IDI2 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1363
End
2459
Orient
+
Integrated sequence
CCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCAC
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
Start
End
1065187/1019247 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-5699/Upstream/376421; hsa-mir-107/Downstream/1056772;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/29524, chr10-CpG: 123/Downstream/29150
Upstream sequence
atcgtgccactgcactccagcctgggtgacagagagagactccgtgtgaaaaaaaaaaaaaaaaTACCAGGTCTGGTTTTTGAAATTCTTTCTCCGTATT
Downstream sequence
ATCAAACAAGTGCTTATAAAATGGAAATTGGGACAAAGGAAATGTTAAATTTCCTCCCTGCAACCAGGCAGATGAGAAATATGGAAATAAGGAAAAGGGA
Target sequence
gcagatcaggaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccatgcgtggtggtgggcatctgtaatcctagctgctcgggaggctaaggcaggagaattgcttgagcccagaggcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagagagactccgtgtgaaaaaaaaaaaaaaaaTACCAGGTCTGGTTT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.