RANBP17 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020350
Fusion event
HBV-RANBP17 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1185
End
2281
Orient
+
Integrated sequence
GCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
170508210/171081206 (Hg38)
End
170509258/171082254 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
RANBP17
miRNAs that regulate target gene
hsa-mir-361-5p
Nearest miRNA
hsa-mir-10397/Upstream/1052640; hsa-mir-10523/Downstream/304402;
Nearest TSS
ENST00000502646/Upstream/112950; ENST00000523665/Downstream/61013;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/218563, chr5-CpG: 417/Downstream/225911
Upstream sequence
CAAAGTATTTTCCAATAATGTCCCAAGATACTACATTTCTTTTAAGTATTGTGTTTAACTATAGAATTATATTCCCTACTGTCAAAGAATATTGCTTTAT
Downstream sequence
TCCAGGCACCTTCAGGTGTCAGTAAAGGAATGATGATTAATCAGCCATTTTCTTGTGTTTCTGGGAGCCTGAAGTTTTCAGGTACATGAGGATTAATTCT
Target sequence
CTTCGGTAGTGGTATCTCTTATTTTCTTTCTCCTTTTCCCCCTAGTCAGTAAAACTAATATAAGTGATGGCCTTCACATCATTTAATAAGAGGATAAGAGCTACATCATGGTCATTGAATAAAAGAATATGGGTTAAGAACTGCTTCCCAGTATACTCTGCAGATTTGATTTATTATGAATGATTTATGAGATATTAGATTGCTGTATAGTAGTTAGCAGTGTATTCACAATCAGCTGCACTCTAATGCCAAGTG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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