VISDB Viral Integration Site DataBase

VIS ID

TVIS10020367

Fusion event

HBV-MYO1D integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1172

End

2272

Orient

+

Integrated sequence

CTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTA

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

31175884/32848866 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-218-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-636 ; hsa-mir-1914-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520f-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-1180/Upstream/497614; hsa-mir-10226/Downstream/4184879;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/24948, chr17-CpG: 115/Downstream/27567

Upstream sequence

gaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgagccactgcaccccagcctgggcgacagagcgagactcc

Target sequence

catgaagccgggagatggagtttgcagtgagcggagattgtgccagtgcactccagcctgggagacagagggagactccgtctcaatgataataataataatatgtggataatgtattgctgaatatttgacatgtagaaatgtaacatgtctataacatattttccagtagcatcaaaaaggaggtagttggaagaaaaatgtattgttaaggtaatccctctggatggtaaagtaataattactaaaatgtat