Basic Information
VIS ID
TVIS10020386
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1
End
886
Orient
+
Integrated sequence
TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
135780698/136445009 (Hg38)
End
135781746/136446057 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10397/Upstream/641934; hsa-mir-103a-1/Downstream/1201515;
Nearest TSS
ENST00000502646/Upstream/47967; ENST00000511165/Downstream/20620;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/87655, chr5-CpG: 134/Downstream/1052270
Upstream sequence
acaattatggcaggaggcaaaggaggagcaaaggcacttcttacatggtggcaggcaagagagcatgtgcaggggaattgccagttataaaacctcacaa
Downstream sequence
agccagcgaaatacaggggtagaggaagcagcagaaaggccctgggtgctcaccgcatcccctagcaggccatctctgcctggcaccacggggaaacagg
Target sequence
agctactctggtggggccttggagaacctttgtgtggacgctctgtatctagctaatctggtggggacatggagaacctttgcgtctagctcagggattataaacgcaccaatcagcgccctgttaaaacagaccactcagctctaccaatcagcaggatgtgggtgaagccagataagagaataaaagcaggctgcccgaggcagcagtggcaaactgctcgggtccccttccacactgtggaagtgtagttct
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate