Basic Information
VIS ID
TVIS10020388
Fusion event
HBV-LOC107987083 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1
End
885
Orient
+
Integrated sequence
TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG
Host Sequence
Chromosome
chr9
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
81025590/78410674 (Hg38)
End
81026638/78411722 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107987083
Nearest miRNA
hsa-mir-101-2/Upstream/7600590; hsa-let-7a-1/Downstream/5558026;
Nearest TSS
ENST00000422679/Upstream/113531; ENST00000376525/Downstream/733952;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/112979, chr9-CpG: 280/Downstream/1158842
Upstream sequence
tggtgtggtcatagcccactgaagcctcaaacctctgggctgaagccatccttccgcctcagcctcccaagtagctgggaccataggtgcatggcactgt
Downstream sequence
agtctcactctgtcaccggggctggagtgcagtggtgcaatcatggctcactgcagcctggatttcctgggctcaagcaatccttccacctcagcctccc
Target sequence
ccaatcagcactctgtatctagctcaaggtttgtaaacacaccaatcagcaccctgtgtctagctcagggtttgtgaatgcaccaatcaacactctgtatctagctactctggtagggacttggagaacctttgtgtggacactatgtatctagctaatttagtggggaggtggagaacctttgtgtctagctcagggattgtaaacacaccagtcagagccctgtcaaaacagaccactgaactctctgcaaaa
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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