KLRG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020398
Fusion event
HBV-KLRG2 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1204
End
2300
Orient
+
Integrated sequence
GTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACC
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
139149181/139464435 (Hg38)
End
139150229/139465483 (Hg38)
Orient
+
Location type
Intronic
Target gene
KLRG2
Nearest miRNA
hsa-mir-10399/Upstream/420278; hsa-mir-11400/Downstream/3009044;
Nearest TSS
ENST00000635602/Upstream/48310; ENST00000521281/Downstream/18180;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/103703, chr7-CpG: 130/Downstream/17251
Upstream sequence
ggttttgtggcagtctttggcattccttggctaacctctgccctcataatcacatggaactctccctgtgtgtatgtctccctctactcaaatttcttct
Downstream sequence
agatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcatggtggcgggtgcctgtagtcccagctact
Target sequence
aattgttttgcctatccaccccgtggtgccaaacccatatactctcctatcctcaatacctccctccacaacccattattctattctagataaacctagctgaccccataaatcctaaatcctttccccactcccctttccattccttaaaaaacagctctaaaagctgctcccacactagctctccctaactcatcccaacctttttcattatacacagccaaagtgcaggactctgtggtcggaattcttaca
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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