Basic Information
VIS ID
TVIS10020403
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1706
End
2802
Orient
+
Integrated sequence
TTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCCCCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTT
Host Sequence
Chromosome
chrX
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
97780446/98525448 (Hg38)
End
97781494/98526496 (Hg38)
Orient
-
Nearest miRNA
hsa-let-7f-2/Upstream/3462222; hsa-mir-105-1/Downstream/8113318;
Nearest TSS
ENST00000429181/Upstream/882859; ENST00000627700/Downstream/47363;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1840081, chrX-CpG: 23/Downstream/1412840
Upstream sequence
gtctggggaggtcttgctggacctgcctagaaagtaaatgagttcctcaggagggtaaaggtgagggctgttaaaggaagttcggaggagcagggagaca
Downstream sequence
gtgctggggtttgagagatcagtcagacacgattggcagggagaacacgtgtgtttttatgagaattatgccaagataggtaacagatgaggaagaaatt
Target sequence
tgagcttggtgaggtgtgtttttaaaagacctttagtccattctacttttcttgaagacggaggaccataagggatataaaggtttcactgaatactaagagcctgaaaaactgcttggctgatttgactaataaaggctcgtctgttatcagactgtattgaggtgggaaggctaaactgaggaattatgtctgacagaaggcaagaaatgactgaggaggccttctcagaccctgtaggaaaggcctctacct
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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