Basic Information
VIS ID
TVIS10020408
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1204
End
2300
Orient
+
Integrated sequence
GTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACC
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
End
57460937/57233802 (Hg38)
Orient
+
Fragile sites / regions
Nearest miRNA
hsa-mir-1301/Upstream/1231959; hsa-mir-10b/Downstream/3153560;
Upstream sequence
GGCTACTGCATGCTGCGGTGGTTGTGTGGGAAACTTCCCTGGGAACAGAACCTGAAGGACCCTGTGGCTGTGCAGACTGCTAAAACAAAGTACAAATTTT
Downstream sequence
cctcctacacagttacctcgtcagtccccattacaacctctgatggctgccgccctagctgcatccctaggagtctaggtacaagacacctctttcagca
Target sequence
actattccggataccacacctgaaccctatgactgtatctctctgatccatctaacattcaccccatttccccatatttccttctttcctgttcctcaccctgaacacacttggtttattgatggtagttccaccaggcctaatcgccacataccagcaaaggcaggctatgctatagtacaagccaccagcccgcctcttggaacctctcatttcctttccattgtggaaatctatcctcacatgaataacttc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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