Basic Information
VIS ID
TVIS10020413
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1204
End
2300
Orient
+
Integrated sequence
GTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACC
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
47876023/47842112 (Hg38)
End
47877071/47843160 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1225/Upstream/13678439; hsa-mir-11401/Downstream/2449456;
Nearest TSS
ENST00000527434/Upstream/117544; ENST00000569726/Downstream/15419;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/380816, chr16-CpG: 31/Downstream/401261
Nearby gene
LINC02192(+7202) ;
Upstream sequence
aaataacttggccaaggtcacacagctattaaggaatggtaccatgtcttggacccaggttaactttaaatcctgagctttATAACGGTTTGATTTCAGT
Downstream sequence
aaaagcagctagcattccaacttctatcactcacggcagttttcctccttctcatctggccactcccacctactccccgactaaaacttccacctatcaa
Target sequence
ttaccatcctgactaaaccattatataaactcacaaaagcaaacctagctgaccccacagagcctaaatcctagctgaccccacagagcctaaatcctttccccactcccctttctgttccttaaaaacagccctaaaagctgctcccacactagatctccctaactcatcccaacctttttcattacacacagccgaagtgcagggctgtgtggttgcaattcttacacaaggaccaggaccacgccctatagc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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