Basic Information
VIS ID
TVIS10020421
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1203
End
2299
Orient
+
Integrated sequence
GGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGAC
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
47876122/47842211 (Hg38)
End
47877170/47843259 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-1225/Upstream/13678538; hsa-mir-11401/Downstream/2449357;
Nearest TSS
ENST00000527434/Upstream/117643; ENST00000569726/Downstream/15320;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/380915, chr16-CpG: 31/Downstream/401162
Nearby gene
LINC02192(+7103) ;
Upstream sequence
atctcccaaacccaaatcccttctacaaaacaactcctttcctccctaggcatggttaggtacttctgcctaggtacctaggtacctaggatacctagtt
Downstream sequence
atctcttcccacacaaggcaaatagttcttagaccatggaaaatatctccttccagcctcacaggcccattctatcctgtcatcatttcataacctcttc
Target sequence
tccccactcccctttctgttccttaaaaacagccctaaaagctgctcccacactagatctccctaactcatcccaacctttttcattacacacagccgaagtgcagggctgtgtggttgcaattcttacacaaggaccaggaccacgccctatagcctttctgtccaaacaacttgaccttactcttttagcctagccctcatgtctgcgtgcagtggctgccactgttttaatacttttagagaccctcaaaat
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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