Basic Information
VIS ID
TVIS10020425
Fusion event
HBV-LOC101928437 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1110
End
2206
Orient
+
Integrated sequence
AAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACC
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
112421240/113178013 (Hg38)
End
112422288/113179061 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928437
Nearest miRNA
hsa-let-7f-2/Upstream/397225; hsa-mir-105-1/Downstream/1460374;
Nearest TSS
ENST00000429181/Upstream/337198; ENST00000371951/Downstream/759157;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/336426, chrX-CpG: 18/Downstream/1211436
Upstream sequence
agagtcctctttttcaagttggaggctgagcttggtgaggtgtgtttttaaaagaccattagtccgttctacctttcctgaagattgaggacggtaaggg
Downstream sequence
cagggagagcacgtgtgtttttatgagaattatgccgagataggtaacagatgaggaagaaatttgggcttgattgaagtaatgggggctgtctgtgaag
Target sequence
agatgtttcctagtctgcatgtaacacggagacagctgtgtaggcgctggaagaaagggaaatgcaaagccagtggttgttcgctaaggacggattagaaacggctaggagagaatgagtaaggttgatattgtggtggagatagctggggagaggtagagggtggcataagaatgggaatgagaataagagtgagtataaaagtaaagaatagaacttcatcagggtgaaagtattggagggttccctgccagc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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