CHODL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020438
Fusion event
HBV-CHODL integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1141
End
2241
Orient
+
Integrated sequence
TTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCA
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
19205393/17833076 (Hg38)
End
19206443/17834126 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHODL
Nearest miRNA
hsa-let-7c/Upstream/1242751; hsa-mir-155/Downstream/851964;
Nearest TSS
ENST00000624081/Upstream/13690; ENST00000543733/Downstream/51482;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/13336, chr21-CpG: 77/Downstream/410655
Upstream sequence
aggagtttgagaccagcctggccaacatggtgaaactccgtctctactcaaaatacaaaaattatctgggcatggtagcacacacctgtagtcctagcta
Downstream sequence
TGTCTATTTCAAGTCTAAAGCTGTGGTTTTCCCCTTCTGCTTTACCCTTCTTCAAATGTTGTTGTAATGTAATTCTTTCCTGAGCTTTCCCTGTTTCCTT
Target sequence
cttgggagcctgaggcaggagaatcccttgaacttggggggtggagatggcagtgagctgagatcgtgccaTATAATTGGCTATAATTTGTAAGAATGTTGTCATCGAGTGTGTCACTTAAGGTCTTAGACTGTGAATCTAACCATATTTAGTGAAATGGCTTACTGTACAAAAAGTCTAAACCAAAGGTTCTCAGGGAACAAAGCACATGTGCAGTTTTAAAACAAAGCAGTGTTTTGTCCCATTGCTGTGATT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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