ZDHHC19 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020440
Fusion event
HBV-ZDHHC19 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1133
End
2233
Orient
+
Integrated sequence
TCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTG
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
195923573/196196702 (Hg38)
End
195924623/196197752 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZDHHC19
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7g/Upstream/314307; hsa-mir-4797/Downstream/1096126;
Nearest TSS
ENST00000440867/Upstream/54066; ENST00000416660/Downstream/1158;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/114354, chr3-CpG: 34/Downstream/9589
Upstream sequence
gcatggtggcacatgcctgtaatcgcagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccgagatcgtgc
Downstream sequence
TCTCAACAAGACCCCGCCCCGCAGCTCGTGCCAGGTCTCCTGCTCCTGGAGGCAAAGGGAGCGGGCTGGCCCCACAGAATGTGCTGCAGAGGCCCCGGGG
Target sequence
GAAATGGTAAGGCCAGCCCTAACCCCACCCCAGAGGCTCCAGAGAGGCAGGGCTGGACCAGGCCAGGCCTGGTGAATCCCTGGGCTGCGAGCGCCCCCTGCAGCCAGACAAAGGTGTGGCCGGGCAGAGGCCAGGTGCTCCCCAACCTCGGACACCCCGACATTGGTGGATTTTCCTCTTCCATCATCTCCAGCCCTAGCTGGGAGCTAGGCCAGTCAACTGCTGCAattattattattattattattGTCTGTT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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