KDM4B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020442
Fusion event
HBV-KDM4B integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1131
End
2231
Orient
+
Integrated sequence
TATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGC
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
End
5026734/5026723 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1227/Upstream/92933; hsa-let-7e/Downstream/1362915;
Upstream sequence
agtgctgggattacaggcgtgagccaccgcacctggcTGGGAGTTAGAGGTTTCTAATGCATTGCAGGCAGATAGTGAATACCAGACACGGGGCAGCTGT
Downstream sequence
GGCAGTTTTGTGGTTTTGAAATTGAGTTTGTATCAAGAGCTTTACTGCTTTTGTAAAAACTTACTGGCATGGTACCAAGAGAAATTCAAACAATAGTTGG
Target sequence
ggcctctggggccttagctcttccctggcttcgctgggtccttccctttgcctagactttcctcctgccctggaccgcccAGAACTTGCACCCCTGCGTGTTTGACAATCACTTCCAGACGCAGCCCCGCTGCCACCCAGACCTCTCTGGTCCCAAACCAACTTCATTTGTCTTTTTCCTTTTTTTTAAATTTATTTAtttattttattttacttattaattttttttgagacagagtttcactcgttgcccagg
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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