Basic Information
VIS ID
TVIS10020445
Fusion event
HBV-LOC100130207 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1166
End
2266
Orient
+
Integrated sequence
AGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTT
Host Sequence
Chromosome
chr3
Cytoband
p26.2
Reference genome
GRCh37/hg19
Start
3746760/3705076 (Hg38)
End
3747810/3706126 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100130207
Nearest miRNA
hsa-let-7g/Downstream/1544051;
Nearest TSS
ENST00000440867/Upstream/77780; ENST00000472075/Downstream/92088;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/525143, chr3-CpG: 190/Downstream/92703
Upstream sequence
CAGCCCAAGGAACCGCTACTGGGAGAAGGTGGAAACCCTAAACCACAACCAAGTCCATCCATAGGGTTTTCCCCATGAAGGTTACCACAACATACTTAAC
Downstream sequence
agaccatatagggtaacttcctaacattatgatggcatttgtaaactgtcatggcgctggtggaagcatagcagtgaggacgaccagaggtcactcttgt
Target sequence
CAGCCCAGTGGAGGCGCGGAAGGATGAACAGATAGATTTCGTGGGCCCATTTCCCTATTACAGAAAGAGATATTTATTGCCTGCAGCACAGCTGAGGGACTGCATTTGGAAATGCCATAGAAAGTAGTCTGTAGCTGAGGTCCTGGGGCTCAGCCCAGGATAAGGCATTTGGCAGGTTCAGCCCCAGAATGGCAGGAAGCCTGCTTTCCAAACAGCAGCTGCAAAAAGAGACTGAGTTTGTTAAAACTTATTTGG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate