Basic Information
VIS ID
TVIS10020458
Fusion event
HBV-chr19 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1164
End
2260
Orient
+
Integrated sequence
TCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCC
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
End
6671777/6671766 (Hg38)
Orient
+
Fragile sites / regions
Nearest miRNA
hsa-mir-1227/Upstream/254207; hsa-let-7e/Downstream/64946;
Nearby gene
TNFSF14(-123) ; C3(+7117) ;
Upstream sequence
TGGAAAGATGGCACCCTTTTCCGTGATCTCTCAATCCCTCTCTCCGGGTGGGAGTGCTCTAAGCAGCTGTTGTACCTGCTGACCCGCTTTGGATTCTGCG
Downstream sequence
gagtagctgggattacaggcgcccaccaccatgcatagctaatttttgtattatatgttggccattatatatgttgtaacatatatgttgtctatatgtt
Target sequence
gctgctttttgtatttttagtagagatgggttttcaccatgtcggtcaggctggtctcgaactcctgacctcaagcgatccacccacctcagcctcccaaagtgctgggattacaaacgtgagccgcaccatgcccggccttctgttgtgttttgatgtgacaagtgcagtgaaaaacacaagagtggaataaaggagTGGATGTGTGCTCtgtgtgtgtgcttgtctgcatgcatatatgtgtgcagtgtgtgc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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