VISDB Viral Integration Site DataBase

VIS ID

TVIS10020464

Fusion event

HBV-SLC10A1 integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1

End

1049

Orient

-

Integrated sequence

TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG

Chromosome

chr14

Cytoband

q24.1

Reference genome

Start

End

70253433/69786716 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

Nearest miRNA

hsa-mir-208a/Upstream/2343738; hsa-mir-1185-1/Downstream/2730104;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/17717, chr14-CpG: 32/Downstream/63414

Upstream sequence

GAATCTAGACCCTGGACAGGGGTACTTTGCTATTGCTGCTGGTGTTTGGATACCTTTGGTGTCTGGATTTTTAACCCGTTCAATACCTTCATTCAATTTT

Downstream sequence

TTGGACCATGGAATGGCACCTGACCCACAGTTACTAAATGTCTGGTTTAGAGCCTAGGGAATGGCTTCTTGTAGTGACTTTGTCCAACGGAGACAATAAC

Target sequence

tcactgcaacccctgccctccctggttcaagcgattctgctgcctcagcctcctgagtagctgggattgcaggcactcgctaccatgcccggctaattttttttttttttttgtatttttaatggagacggggtttcgtcatgttggtcaggctggtctcaaacttctgacctcaagtgatccacccgcctcaacttcccaaagtgttgggattataagcgtgagccaccacgccAGCCTCATGTGTTACTTCAC