Basic Information
VIS ID
TVIS10020471
Fusion event
HBV-LOC107985875 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1299
End
2395
Orient
+
Integrated sequence
CGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCT
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
43032962/42805822 (Hg38)
End
43034010/42806870 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985875
Nearest miRNA
hsa-mir-1301/Upstream/7334336; hsa-mir-10b/Downstream/4570805;
Nearest TSS
ENST00000437798/Upstream/13229; ENST00000623515/Downstream/199190;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/12453, chr2-CpG: 145/Downstream/2968
Upstream sequence
ACGTGCTGGCGTTTTCGATCCTGGGGGCACCCGACAGCGTTTAGGGGTCAAGAATTAATATTAAGAGCTGGAGAACTAACAGATCCACATAGATGTCCAC
Downstream sequence
aacaattaaaataatcctttaagatcccccgctacccattaaaatggaatcactttggaagcctctgaatgcgtgctcaccggtacatgaagcattcatt
Target sequence
TCTCCAGAGGAACATATGATTAAAAATACATCGAGTCATCCATAGGATCGttttttttttttttttttttttttttttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgcctcccgggttcacaccattctcctgcctcagcctcccaagtagctgggattataggcacccaccaccacgcctggctaattttttgtat
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate