Basic Information
VIS ID
TVIS10020475
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1170
End
2266
Orient
+
Integrated sequence
CTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTC
Host Sequence
Chromosome
chr5
Cytoband
p14.3
Reference genome
End
22933195/22933086 (Hg38)
Orient
+
Fragile sites / regions
Nearest miRNA
hsa-mir-10397/Upstream/5776046; hsa-mir-103a-1/Downstream/9003016;
Upstream sequence
GAATTATCTTGAACTCTGAACATTTCTTTTGGAATTTTTAAAACATGTAAATTCACGTAATATCCCAAAATTCTGGTTCCTACATCTGAAAAATAAAGTT
Downstream sequence
aattgcccctccccttccactggctcctaattacctctacaagactctcaacttaacccactctctgttaagccagtccaatcctatcctggcaaacaac
Target sequence
tcctaatttatgaactaattcgtagatttgggcttccccaaagcttacaaagtgacaatggtctggattttaaagccacgataactcagggaatttccagggtactaaagaaacaatatcaccttcactgcgcctggaggccacaatcttaagggaaggttgagaaggcaaatgaaacactcaagagggacttgaggaaactaacacaagaaactcatctcccacggcctaacgttgaaaatctgaaattctctt
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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