Basic Information
VIS ID
TVIS10020476
Fusion event
HBV-chrY integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1137
End
2233
Orient
+
Integrated sequence
AACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCT
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
8342641/8474600 (Hg38)
End
8343689/8475648 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-3690-2/Upstream/3868372; hsa-mir-12120/Downstream/5003529;
Nearest TSS
ENST00000430575/Upstream/669676; ENST00000413486/Downstream/162646;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/194431, chrY-CpG: 24/Downstream/860878
Upstream sequence
caagggaattgcttgaacctgggagtcagagggtgcggtgagccaagatcgtgccatttcattccagcctgggcaacaagggtgaaactccgtctcaaaa
Downstream sequence
tgagtccacggaatcgcttgaacccaggagttggaggttgcagttagccatcactgtgacactgcactccagcctagggacagagcaataccccatctca
Target sequence
tacactaagcagcatggacacatcataatattatatcttcaaacccttaaaAGGAACATGCTCAAAATATGTTGTTggccaggcatgatggctcatgccagtaatctcagtactttgggatgctgaggagggtgcatgcagaggtcaggatgctgaggccatcctggacaacctgaagaaaccacgtctctactaaaaaataaaaaAAAAATTGTAATTTATGGTTGTTTGTGTGACCAtattgcaggatcttgc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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