VISDB Viral Integration Site DataBase

VIS ID

TVIS10020495

Fusion event

HBV-chr5 integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1

End

1049

Orient

-

Integrated sequence

TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

1295186/1295071 (Hg38)

Orient

+

Location type

Intronic

Target gene

LOC110806263 ; TERT

miRNAs that regulate target gene

hsa-mir-138-5p ; hsa-mir-498 ; hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-512-5p ; hsa-mir-1207-5p ; hsa-mir-1266-5p ; hsa-mir-1182 ; hsa-mir-181a-5p ; hsa-mir-6776-3p ; hsa-mir-197-3p ; hsa-mir-6740-3p ; hsa-mir-6760-3p ; hsa-mir-532-5p ; hsa-mir-3064-5p ; hsa-mir-422a ; hsa-mir-346 ; hsa-mir-1226-3p ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-143-3p ; hsa-mir-3161 ; hsa-mir-3605-5p ; hsa-mir-3620-3p ; hsa-mir-3682-3p ; hsa-mir-4323 ; hsa-mir-4712-3p ; hsa-mir-4733-3p ; hsa-mir-4758-3p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-7112-3p

Nearest miRNA

hsa-mir-4635/Upstream/231049; hsa-mir-10397/Downstream/14239;

Nearest TSS

Nearest CpG islands

chr5-CpG: 485/Target, None/Upstream, None/Downstream

Nearest cancer related gene

TERT(OG, No orient, 0)

Upstream sequence

tatgggaataatagacactgtggactagtagagagtggagaggaaaaggtgggttaaaaaactacctatcaggtactgtgctcactgccagggtgacagg

Downstream sequence

ggggccgcggaaaggaaggggaggggctgggagggcccggagggggctgggccggggacccgggaggggtcgggacggggcggggtccgcgcggaggagg

Target sequence

CACCCTCCAAAGAGGTGGCTTCTTCGGCGGGTCTGGCAGGTGACACCACACAGAAACCACGGTCACTCGGTCCACGCGTCCTGCCCGGGTGGGCCCAGGACCCCTGCCCAACGGGCGTCCGCTCCGGCTCAGGGGCAGCGCCACGCCTGGGCCTCTTGGGCAACGGCAGACTTCGGCTGGCACTGCCCCCGCGCCTCCTCGCACCCGGGGCTGGCAGGCCCAGGGGGACCCCGGCCTCCCTGACGCTATGGTTCC