Basic Information
VIS ID
TVIS10020496
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1
End
1049
Orient
-
Integrated sequence
TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1295221/1295106 (Hg38)
End
1296269/1296154 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/232132; hsa-mir-10397/Downstream/13156;
Nearest TSS
ENST00000502646/Upstream/37; ENST00000605200/Downstream/25675;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Upstream sequence
CAAAAGGGACATATTTTTAACCTTTTGTTATTTTCAGGGTGGGGGGGGATAGAGTGGGGTCAGGAAGTGGTTTAGAATCTCTATGGATGATAAAATAATA
Downstream sequence
CTGGGTCTCCCGAGGCCTTGCAGGGATGCTGTAGCTGAGGTCGGCAAACACTGAAATGCTAACAAACGCAACCTTAAATGTAACCTTTCCTACTTTCAGA
Target sequence
cccggagggggctgggccggggacccgggaggggtcgggacggggcggggtccgcgcggaggaggcggagctggaaggtgaaggggcaggacgggTGCCCGGGTCCCCAGTCCCTCCGCCACGTGGGAAGCGCGGTCCTGGGCGTCTGTGCCCGCGAATCCACTGGGAGCCCGGCCTGGCCCCGACAGCGCAGCTGCTCCGGGCGGACCCGGGGGTCTGGGCCGCGCTTCCCCGCCCGCGCGCCGCTCGCGCTCC
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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