hsa-mir-6754-3p _LIHC.png
HIBADH _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020504
Fusion event
HBV-HIBADH integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1443
End
2539
Orient
+
Integrated sequence
AATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTG
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
End
27671869/27632250 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1183/Upstream/461639; hsa-mir-10399/Downstream/2048484;
Upstream sequence
TTCAAGTAAACAGTTAATAATGTTCATTGAGTGAAGGCAAGAAACCTACAAAAATAAAAATATAAAAGAAATATGCCTGTAagggaaatttttatttgta
Downstream sequence
ACAATTGTAATTTCCTAATAGTTCTAACATGTGAAATTCATGAACTATCATAACAAGAAAATATCCACAGGTGAGAAATACATACTTTAGAATCCCATTT
Target sequence
CCATAACTGTAACAGGCTAGGTAACAGGACAGCTAGGATGCCTCTGGACCACACACACTGTGGCCCTGAGAGCTCCATCCAAAATGAGTGTCTTTTAACCTTCCCTGAAATCTAAACATTTATCTTATCAGTTTTCTGCCTAATATCCAAGTGTCTTTTGCTTCCTTCCAAGTTGGTTAGTTTTCCAACACAATTCAATTACCAGAAACTTCAAATTTCACATATTACAGTTTCCTGAAATTACACCCTTTCTTT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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