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VISDB
Viral Integration Site DataBase
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TVIS10020504
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020504
Fusion event
HBV-HIBADH integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1443
End
2539
Orient
+
Integrated sequence
AATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTG
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
27670821/27631202 (Hg38)
End
27671869/27632250 (Hg38)
Orient
+
Location type
Intronic
Target gene
HIBADH
miRNAs that regulate target gene
hsa-mir-215-5p
;
hsa-mir-34a-5p
;
hsa-mir-192-5p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-6873-3p
;
hsa-mir-377-3p
;
hsa-mir-627-3p
;
hsa-mir-3124-3p
;
hsa-mir-942-5p
;
hsa-mir-6837-3p
;
hsa-mir-6754-3p
;
hsa-mir-412-3p
;
hsa-mir-1236-3p
;
hsa-mir-6515-3p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-520f-5p
;
hsa-mir-1228-3p
Nearest miRNA
hsa-mir-1183/Upstream/461639; hsa-mir-10399/Downstream/2048484;
Nearest TSS
ENST00000635602/Upstream/269359;
ENST00000490455/Downstream/15506;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/378624
,
chr7-CpG: 54/Downstream/30351
Upstream sequence
TTCAAGTAAACAGTTAATAATGTTCATTGAGTGAAGGCAAGAAACCTACAAAAATAAAAATATAAAAGAAATATGCCTGTAagggaaatttttatttgta
Downstream sequence
ACAATTGTAATTTCCTAATAGTTCTAACATGTGAAATTCATGAACTATCATAACAAGAAAATATCCACAGGTGAGAAATACATACTTTAGAATCCCATTT
Target sequence
CCATAACTGTAACAGGCTAGGTAACAGGACAGCTAGGATGCCTCTGGACCACACACACTGTGGCCCTGAGAGCTCCATCCAAAATGAGTGTCTTTTAACCTTCCCTGAAATCTAAACATTTATCTTATCAGTTTTCTGCCTAATATCCAAGTGTCTTTTGCTTCCTTCCAAGTTGGTTAGTTTTCCAACACAATTCAATTACCAGAAACTTCAAATTTCACATATTACAGTTTCCTGAAATTACACCCTTTCTTT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Sample Information
×
Sample name
TCGA-G3-A3CH-11A-11R-A22L-07
Sample type
Tumor
Gender
Female
CpG Island Information
×
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