Basic Information
VIS ID
TVIS10020505
Fusion event
HBV-LINC02664 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1205
End
2301
Orient
+
Integrated sequence
TTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCC
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
31482850/31193921 (Hg38)
End
31483898/31194969 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02664
Nearest miRNA
hsa-mir-1265/Upstream/825256; hsa-mir-107/Downstream/3884629;
Nearest TSS
ENST00000439456/Upstream/6038; ENST00000558832/Downstream/123526;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/59534, chr10-CpG: 243/Downstream/123329
Upstream sequence
AAGAGGTCTTTTACGCTGTTATTGCAAAAGCATAGATGTTTCTACAGAGTTTTGATAGGATAACATTTTCACAGTGATTATGAATTTACATCGTCCCTAG
Downstream sequence
attcacattggttttttggttttgttttggctgtactgtgttacaaacaattttgcaatcaatctatctttctatattgttgattggggcccaggtatgt
Target sequence
ttccttacctggcagcattgattgtcacttgacatgttgcatgtttatttcattgtttgccccagcagaatgtgagctcctgctggagggagcagggatttgatcttgtcacttgatgcctctccatgcctagttggtaggaggacctcagtgatagttgttaaataaatgGGTGCgtaatcccagcggtgaggctgaggcaggaggattgcttgaggtcagaagttcaaaacctgcctgggcaacatagcaaga
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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