FGGY _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020507
Fusion event
HBV-FGGY integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1295
End
2391
Orient
+
Integrated sequence
TGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCC
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
GRCh37/hg19
Start
59995830/59530158 (Hg38)
End
59996878/59531206 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
FGGY
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12136/Upstream/4304435; hsa-mir-101-1/Downstream/202021;
Nearest TSS
ENST00000473358/Upstream/17842; ENST00000466791/Downstream/22712;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/233036, chr1-CpG: 90/Downstream/283209
Upstream sequence
CAATTCTAGCCACAGATTTAAAGTTTGGAAAAAAAAAAAAACCCAGCCTGGCGGAAAGAATTTAAATTATAAAAACTTAGAAGTATGGAATGTGAAATCA
Downstream sequence
agtcacctctttaaacctcacttttttATATAGGTGTGAAGATCAAGATTCATGCTTTTTCTTCTAATATATCCACTTTTATATGCCAAAATTTTCCTAC
Target sequence
GTTAAATAAGCAAAACAAAAGGCCTCCCAAAGCTGAGAAAACACTTGCCATAGAGTGCACATACTGTAGGAAAGTACAAGGATTATTCTCCGGCTGTCACCCAGCACTGCTAACTTAGAATTATAGATAAAATATGCTGTAATTTTAATAATTAATAGCTGACTATGCAAAAATATTATTTTCTCCTAGCTTCAACCAACAGGTAACATATCTGCCTTTCAtgtcaggtactgtgctaggtactaaagatataaa
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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