Basic Information
VIS ID
TVIS10020511
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1443
End
2539
Orient
+
Integrated sequence
AATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTG
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
End
88178730/88549415 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10525/Upstream/12633098; hsa-mir-10399/Downstream/3654600;
Upstream sequence
catacaaataattatagtgcacagaaggtaaacaaacttccatctgagcctagaggggagtagaatcacttctggctgggggttcagaggagacctttgg
Downstream sequence
aaaaaatttttGCTAATAATTATGCAGGACAATAGGTATAAATTATCCTGGGAAAACCACACTATATGGTATTGTTAAGGGCATAACTGAAATAATGCAT
Target sequence
cacagtaaacattcagtaTGTCCTACAGTCATACTGATTTCTTTTATTCAGGATTCAAAAAGCTTAACATACAATAATGAGTTTTTTTTCAAACTGTGGTCAAAATATTATATTTTCtagaattttacagccagaaaagccttaaaccacaaatcttaattctgtaaatgaaggaacagctctaatgaagtgagatgatgtgtccaaggtggcatagttaattagtgATCTGATGTTGGCAGGAGAGACTCCATT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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