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VISDB
Viral Integration Site DataBase
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TVIS10020519
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020519
Fusion event
HBV-FGF14 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1598
End
2694
Orient
+
Integrated sequence
GCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCCCCTCTGCCTAATCATCTCATGTTCAT
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
102578825/101926475 (Hg38)
End
102579873/101927523 (Hg38)
Orient
+
Location type
Intronic
Target gene
FGF14
miRNAs that regulate target gene
hsa-mir-574-5p
;
hsa-mir-4455
;
hsa-mir-6867-5p
;
hsa-mir-223-5p
;
hsa-mir-511-3p
;
hsa-mir-5010-3p
;
hsa-mir-147a
;
hsa-mir-6818-5p
;
hsa-mir-8068
Nearest miRNA
hsa-mir-1297/Upstream/2283326; hsa-mir-1267/Downstream/40119;
Nearest TSS
ENST00000623511/Upstream/9830;
ENST00000444686/Downstream/440016;
Nearest CpG islands
None/Target,
chr13-CpG: 551/Upstream/9350
,
chr13-CpG: 60/Downstream/466807
Upstream sequence
TAATTACTAGAAGCCATTAtttagaaacttaaatctcttataaataaacattgatctgaaatttattaattctttcagcttcatatcactttttttcttc
Downstream sequence
GAGACAGCAGTTTTACATATTTGTACTGTACAAAGTTTAGATCTGAGCCCTTGTTGCCCTGCTGCAAGAGTCAAAGCTGATACTCAAATACTCTAATTCC
Target sequence
AACTTTAATTATTGCATCGCTCAGAAAAAAACGTACAGCAATTCTCAGTGATTGTGGAGACAGGACCATTAGGCTCCCCAGTGAATTGTGAGAATGCATTTTTCTAAGCCCCACATAAATCCATGAAGAATTTAATTTCTTGAGTTTATAACATGCCTTTCATGAGATTTAAGGCCATAGAATCTAGCTAAATAAAACTAAAGCTAGACATGTGATGCTTTACAAAATGAGATTTGGGGCCTAAGGCTATTGCCA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Sample Information
×
Sample name
TCGA-G3-A3CH-11A-11R-A22L-07
Sample type
Tumor
Gender
Female
CpG Island Information
×
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