FGF14 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020519
Fusion event
HBV-FGF14 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1598
End
2694
Orient
+
Integrated sequence
GCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCCCCTCTGCCTAATCATCTCATGTTCAT
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
End
102579873/101927523 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1297/Upstream/2283326; hsa-mir-1267/Downstream/40119;
Upstream sequence
TAATTACTAGAAGCCATTAtttagaaacttaaatctcttataaataaacattgatctgaaatttattaattctttcagcttcatatcactttttttcttc
Downstream sequence
GAGACAGCAGTTTTACATATTTGTACTGTACAAAGTTTAGATCTGAGCCCTTGTTGCCCTGCTGCAAGAGTCAAAGCTGATACTCAAATACTCTAATTCC
Target sequence
AACTTTAATTATTGCATCGCTCAGAAAAAAACGTACAGCAATTCTCAGTGATTGTGGAGACAGGACCATTAGGCTCCCCAGTGAATTGTGAGAATGCATTTTTCTAAGCCCCACATAAATCCATGAAGAATTTAATTTCTTGAGTTTATAACATGCCTTTCATGAGATTTAAGGCCATAGAATCTAGCTAAATAAAACTAAAGCTAGACATGTGATGCTTTACAAAATGAGATTTGGGGCCTAAGGCTATTGCCA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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