VISDB Viral Integration Site DataBase

VIS ID

TVIS10020527

Fusion event

HBV-ARID5B integration

Validated

No

Detection method

VirusScan

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1205

End

2301

Orient

+

Integrated sequence

TTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCC

Chromosome

chr10

Cytoband

q21.2

Reference genome

Start

End

63844799/62085040 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-22-3p ; hsa-mir-196a-5p ; hsa-mir-196b-5p ; hsa-mir-1277-5p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-5011-5p ; hsa-mir-186-3p ; hsa-mir-320a ; hsa-mir-373-5p ; hsa-mir-576-3p ; hsa-mir-616-5p ; hsa-mir-767-3p ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-320d ; hsa-mir-4426 ; hsa-mir-4429 ; hsa-mir-4491 ; hsa-mir-4647 ; hsa-mir-4657 ; hsa-mir-4662b ; hsa-mir-371b-5p ; hsa-mir-6833-5p ; hsa-mir-570-5p ; hsa-mir-3692-3p ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-4476 ; hsa-mir-4694-3p ; hsa-mir-5692a ; hsa-mir-6876-5p ; hsa-mir-548ba ; hsa-mir-33a-5p ; hsa-mir-185-5p ; hsa-mir-432-5p ; hsa-mir-33b-5p ; hsa-mir-1284 ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-5192 ; hsa-mir-6813-3p ; hsa-mir-583 ; hsa-mir-573 ; hsa-mir-3156-5p ; hsa-mir-3616-5p ; hsa-mir-4670-3p ; hsa-mir-190a-3p ; hsa-mir-656-3p ; hsa-mir-4795-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3190-3p ; hsa-mir-7856-5p ; hsa-mir-552-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-140-3p ; hsa-mir-4482-3p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-4680-5p ; hsa-mir-126-5p ; hsa-mir-218-2-3p ; hsa-mir-3928-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-324-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6743-5p ; hsa-mir-4688

Nearest miRNA

hsa-mir-1265/Upstream/4779433; hsa-mir-107/Downstream/1287917;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/180452, chr10-CpG: 67/Downstream/183242

Upstream sequence

tatgattTCACGACCAGGGAGATAACTAAGCAGCCatcatatcaaacacttacaaagaactcatgtctcaggcactgttctgagtgctttctgcctgttg

Downstream sequence

AAAATAAAATGTTTTCAGATGggcagcactaggttcagatctcacctctaacaaatggtatgactcaggcaaattgtttaacctttataggcctcaattg

Target sequence

CAGCCATATATTATTTTAGTAAGTCTACATAGGGAGGGCAGTTTCCAGTTTTAGCAGCTGTAACATGTTTAAACTCAGTTTGTAATGGGATCTGAAGATAACTATTCCCCATGGGCTCTGTTGATCTTCATGGCTGGCCAACTGCCAGATGTAGGGCTCCAAAGTATTATTCACGCCTCCTTGCTCATACCTTGTCCAAGCATGCTCAGTAAATGAATTTTGTTTCTAATATGCTATAAATTGGGATCTGATTTT