AOAH _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020528
Fusion event
HBV-AOAH integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1443
End
2539
Orient
+
Integrated sequence
AATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTG
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
36646450/36606844 (Hg38)
End
36647498/36607892 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7C
Target gene
AOAH
Nearest miRNA
hsa-mir-1183/Upstream/1666010; hsa-mir-10399/Downstream/311465;
Nearest TSS
ENST00000635602/Upstream/12188; ENST00000419326/Downstream/53408;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/216647, chr7-CpG: 136/Downstream/839859
Upstream sequence
GTTGTCATCTAATAGTATATTGCCTTTTTATAGTCTCTGCAGAGGTAAATTTCAATGCCGGATCATTATTATTTGTATTTTTAAGTTATTTTCCCCGGAT
Downstream sequence
CTTGAGAGGCACTGTGGGGAACAGGTGACTGAACTTGCCATGGTGGAGTGTGTGCATTCTCTGCACTCCACTAGTCACTTAAGTTTGCTGCTTCAGCCCT
Target sequence
TTGTGGCGTGAGAAGGTCGATTTGAACCTAACTACTGAGGTTTAGATATTTCGGAGAGAAGCTCAGGTTGTTTAAGAAGAAAGGGAGCAGACAGGTCGGAATGAGACTCAGAACCCTTTGTGTCTCTGGAACCATGAGAGAGAGTCTTCATACTCTCTTTATTGAACTACAAATATCTTTCCAGATGAATACACTCCTAATCTAATTAGCTGTAAACAGGACTCCCGGGTGCCCCACTACTTAAGCAGAGGATGG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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